Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.82□□□□□ -1.64
SCN4AP35499 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SCN4AP35499 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 U1.1-201ENST00000384101 164 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 RNVU1-14-201ENST00000384770 164 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 ARL4AP3-201ENST00000441452 574 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.81□□□□□ -1.64
SCN4AP35499 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.81□□□□□ -1.64
SCN4AP35499 BNIP3P41-201ENST00000503774 571 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.81□□□□□ -1.64
SCN4AP35499 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 AC005972.3-201ENST00000606304 481 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.81□□□□□ -1.64
SCN4AP35499 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 MTCO1P12-201ENST00000414273 1543 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.81□□□□□ -1.64
SCN4AP35499 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SCN4AP35499 AL078604.1-201ENST00000404609 466 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 RPS3AP46-201ENST00000448352 682 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 RPL23AP37-201ENST00000479658 549 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 RPS3AP6-201ENST00000484430 795 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 CDH12P2-201ENST00000504393 298 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 AC021146.3-201ENST00000511911 260 ntBASIC4.81□□□□□ -1.64
SCN4AP35499 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.81□□□□□ -1.64
SCN4AP35499 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.81□□□□□ -1.64
SCN4AP35499 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCN4AP35499 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SCN4AP35499 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
SCN4AP35499 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SCN4AP35499 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
SCN4AP35499 AC009229.4-201ENST00000623854 1947 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SCN4AP35499 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SCN4AP35499 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SCN4AP35499 RNU1-44P-201ENST00000384453 163 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 AL122016.1-201ENST00000403365 367 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SCN4AP35499 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 UBTFL3-201ENST00000418934 1024 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.8□□□□□ -1.64
SCN4AP35499 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.8□□□□□ -1.64
SCN4AP35499 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.8□□□□□ -1.64
SCN4AP35499 CYCSP53-201ENST00000455540 265 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 UBTFL6-201ENST00000477929 1024 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 RPS29P2-201ENST00000479278 136 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 AL049873.1-201ENST00000480540 376 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 RPS4XP18-201ENST00000495480 763 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.8□□□□□ -1.64
SCN4AP35499 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SCN4AP35499 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.8□□□□□ -1.64
SCN4AP35499 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.8□□□□□ -1.64
SCN4AP35499 AL596275.2-204ENST00000641628 552 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 AC138627.1-204ENST00000641894 765 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 AL596275.2-206ENST00000641957 626 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SCN4AP35499 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SCN4AP35499 AC126323.6-202ENST00000568092 3511 ntBASIC4.8□□□□□ -1.64
SCN4AP35499 DDX18P6-201ENST00000450119 1997 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCN4AP35499 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCN4AP35499 SNORD96B-201ENST00000386148 79 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN4AP35499 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCN4AP35499 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN4AP35499 AC090136.1-201ENST00000520009 240 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SCN4AP35499 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN4AP35499 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.79□□□□□ -1.64
SCN4AP35499 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
SCN4AP35499 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCN4AP35499 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCN4AP35499 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCN4AP35499 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCN4AP35499 AL513548.1-201ENST00000562904 1724 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN4AP35499 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 BX510359.1-201ENST00000456973 237 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN4AP35499 RPL21P7-201ENST00000557463 483 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN4AP35499 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN4AP35499 AC243312.2-201ENST00000623340 601 ntBASIC4.79□□□□□ -1.64
SCN4AP35499 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN4AP35499 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN4AP35499 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN4AP35499 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SCN4AP35499 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.78□□□□□ -1.64
SCN4AP35499 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN4AP35499 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN4AP35499 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SCN4AP35499 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN4AP35499 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SCN4AP35499 RPS24P12-201ENST00000402084 394 ntBASIC4.78□□□□□ -1.64
SCN4AP35499 AL592291.1-201ENST00000403830 352 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms