Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 MIR4528-201ENST00000577763 90 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 DUXAP4-201ENST00000603046 613 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC012360.2-201ENST00000609349 391 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 MIR6780B-201ENST00000610307 79 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC079684.1-201ENST00000621405 437 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AC009033.1-201ENST00000624279 431 ntBASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC39Q9UFE4 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 MFSD8-239ENST00000641590 2479 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 Y_RNA.326-201ENST00000365176 113 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 RNU6-1227P-201ENST00000383981 107 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AL079342.2-201ENST00000403367 482 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 RNU2-17P-201ENST00000410290 190 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 SEPT7P8-201ENST00000413308 775 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 BX284632.2-201ENST00000421091 399 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC007563.3-201ENST00000433233 371 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 UBE2V1P3-201ENST00000439651 417 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AL512605.1-202ENST00000441919 381 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AL359955.2-201ENST00000445380 353 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 RAB28P3-201ENST00000448325 597 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 MEMO1P4-201ENST00000453590 386 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 RPSAP37-201ENST00000470913 821 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 RPS3AP17-201ENST00000472594 777 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 MTND6P6-201ENST00000478031 263 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 RPL7P18-201ENST00000478965 734 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC013828.1-201ENST00000481845 158 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AL358832.1-201ENST00000497800 389 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AK4P6-201ENST00000505168 528 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 IGBP1P5-201ENST00000507524 1000 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC105384.2-201ENST00000508433 640 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC023632.1-201ENST00000518463 375 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC079905.1-201ENST00000549280 475 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC008277.2-201ENST00000605196 797 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 NANOGP3-201ENST00000605855 286 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC010632.3-201ENST00000611377 369 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC010205.1-201ENST00000616668 449 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 MTND4P27-201ENST00000450813 1354 ntBASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CCDC39Q9UFE4 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AP002001.2-201ENST00000529025 1469 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 HSPA8P14-201ENST00000552265 1805 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 MFSD8-219ENST00000641228 2559 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 snoZ40.1-201ENST00000364540 72 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 AL354890.1-201ENST00000413730 346 ntBASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.53□□□□□ -1.36
CCDC39Q9UFE4 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms