Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 OR56B2P-201ENST00000317102 954 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 IL6-203ENST00000401651 539 ntTSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 Z74021.1-201ENST00000423610 407 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC236972.1-201ENST00000433225 199 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 ALG13-211ENST00000473389 693 ntTSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL161431.1-201ENST00000618966 4205 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC004944.1-201ENST00000517807 3059 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL359643.1-201ENST00000404109 423 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL691449.1-201ENST00000426570 421 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 ARL4AP4-201ENST00000434170 518 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC092447.2-201ENST00000435487 669 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC010469.1-201ENST00000463864 576 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AP000942.1-201ENST00000463969 747 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC025164.1-201ENST00000496249 478 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC023632.4-201ENST00000517783 191 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC012442.3-202ENST00000636742 206 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LDHAL6CP-202ENST00000550738 3224 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC1.28□□□□□ -2.21
SYNE1Q8NF91 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
SYNE1Q8NF91 MTCO1P46-201ENST00000451639 1491 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 MARK2P15-201ENST00000432204 2186 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 RN7SKP159-201ENST00000410657 292 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 MRPL48P1-201ENST00000445390 636 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 AC004980.3-201ENST00000447046 365 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 BTF3P6-201ENST00000448054 499 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 APOOP2-201ENST00000461561 539 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 MYL12BP2-201ENST00000503948 512 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC1.28□□□□□ -2.21
SYNE1Q8NF91 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC1.28□□□□□ -2.21
SYNE1Q8NF91 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC1.28□□□□□ -2.21
SYNE1Q8NF91 AC005034.4-201ENST00000603612 899 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 Z98200.1-201ENST00000607298 470 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC1.28□□□□□ -2.21
SYNE1Q8NF91 AC233968.1-201ENST00000611212 1300 ntBASIC1.28□□□□□ -2.21
SYNE1Q8NF91 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 MIR200C-201ENST00000384980 68 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 RPL21P67-201ENST00000402896 478 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 VN1R51P-201ENST00000411675 945 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AMMECR1LP1-201ENST00000415152 841 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 GAS5-223ENST00000452197 483 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 RNA5SP246-201ENST00000458909 119 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 RPL23AP65-201ENST00000475608 468 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 RPL23AP94-201ENST00000512518 302 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC007546.2-201ENST00000623996 360 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 RNU1-63P-201ENST00000383902 164 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC069157.1-201ENST00000421749 137 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 MIR6500-201ENST00000622700 86 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC024560.2-201ENST00000507981 1497 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC013429.2-201ENST00000418798 781 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 OR4F13P-201ENST00000428478 931 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 RNA5SP446-201ENST00000515955 82 ntBASIC1.27□□□□□ -2.21
SYNE1Q8NF91 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SYNE1Q8NF91 5S_rRNA.1-201ENST00000364415 116 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms