Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.01□□□□□ -1.77
VCANP13611 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.01□□□□□ -1.77
VCANP13611 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
VCANP13611 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 MIR921-201ENST00000401133 56 ntBASIC4.01□□□□□ -1.77
VCANP13611 AC062016.2-201ENST00000420950 676 ntBASIC4.01□□□□□ -1.77
VCANP13611 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.01□□□□□ -1.77
VCANP13611 RPL7P1-201ENST00000468161 747 ntBASIC4.01□□□□□ -1.77
VCANP13611 AC108145.1-201ENST00000503770 153 ntBASIC4.01□□□□□ -1.77
VCANP13611 STMN1P2-201ENST00000508435 439 ntBASIC4.01□□□□□ -1.77
VCANP13611 ATP5F1P5-201ENST00000526403 760 ntBASIC4.01□□□□□ -1.77
VCANP13611 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.01□□□□□ -1.77
VCANP13611 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.01□□□□□ -1.77
VCANP13611 AF001550.2-201ENST00000636643 217 ntBASIC4.01□□□□□ -1.77
VCANP13611 AC119674.1-207ENST00000641355 633 ntBASIC4.01□□□□□ -1.77
VCANP13611 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
VCANP13611 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
VCANP13611 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.01□□□□□ -1.77
VCANP13611 BX890604.2-201ENST00000427883 474 ntBASIC4.01□□□□□ -1.77
VCANP13611 AC004938.1-201ENST00000438468 308 ntBASIC4.01□□□□□ -1.77
VCANP13611 RN7SKP18-201ENST00000516005 275 ntBASIC4.01□□□□□ -1.77
VCANP13611 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
VCANP13611 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.01□□□□□ -1.77
VCANP13611 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
VCANP13611 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VCANP13611 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.01□□□□□ -1.77
VCANP13611 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
VCANP13611 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
VCANP13611 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4□□□□□ -1.77
VCANP13611 SNORA54-201ENST00000384281 123 ntBASIC4□□□□□ -1.77
VCANP13611 SOD2P1-201ENST00000396543 562 ntBASIC4□□□□□ -1.77
VCANP13611 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4□□□□□ -1.77
VCANP13611 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4□□□□□ -1.77
VCANP13611 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 AC103881.1-201ENST00000603476 538 ntBASIC4□□□□□ -1.77
VCANP13611 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC4□□□□□ -1.77
VCANP13611 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC4□□□□□ -1.77
VCANP13611 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC4□□□□□ -1.77
VCANP13611 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4□□□□□ -1.77
VCANP13611 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 REREP1Y-201ENST00000422655 198 ntBASIC4□□□□□ -1.77
VCANP13611 REREP2Y-201ENST00000439103 200 ntBASIC4□□□□□ -1.77
VCANP13611 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC4□□□□□ -1.77
VCANP13611 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4□□□□□ -1.77
VCANP13611 OR2AS2P-201ENST00000606902 342 ntBASIC4□□□□□ -1.77
VCANP13611 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 AL360270.2-201ENST00000562952 5985 ntBASIC4□□□□□ -1.77
VCANP13611 AC005831.1-201ENST00000624384 1697 ntBASIC4□□□□□ -1.77
VCANP13611 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4□□□□□ -1.77
VCANP13611 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 RNU4-82P-201ENST00000362443 140 ntBASIC4□□□□□ -1.77
VCANP13611 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4□□□□□ -1.77
VCANP13611 ATP5HP2-201ENST00000433885 485 ntBASIC4□□□□□ -1.77
VCANP13611 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4□□□□□ -1.77
VCANP13611 OR52Y1P-201ENST00000452418 828 ntBASIC4□□□□□ -1.77
VCANP13611 AP002884.2-201ENST00000471647 395 ntBASIC4□□□□□ -1.77
VCANP13611 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4□□□□□ -1.77
VCANP13611 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4□□□□□ -1.77
VCANP13611 ZNF826P-207ENST00000622273 1910 ntBASIC4□□□□□ -1.77
VCANP13611 AC010266.2-201ENST00000564741 3255 ntBASIC3.99□□□□□ -1.77
VCANP13611 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
VCANP13611 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.99□□□□□ -1.77
VCANP13611 YWHAEP4-201ENST00000505390 198 ntBASIC3.99□□□□□ -1.77
VCANP13611 RNA5SP303-201ENST00000516192 130 ntBASIC3.99□□□□□ -1.77
VCANP13611 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.99□□□□□ -1.77
VCANP13611 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.99□□□□□ -1.77
VCANP13611 ATP5A1P2-202ENST00000616464 443 ntBASIC3.99□□□□□ -1.77
VCANP13611 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VCANP13611 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.99□□□□□ -1.77
VCANP13611 OTUD4P1-201ENST00000237841 3067 ntBASIC3.99□□□□□ -1.77
VCANP13611 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VCANP13611 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VCANP13611 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.99□□□□□ -1.77
VCANP13611 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.99□□□□□ -1.77
VCANP13611 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.99□□□□□ -1.77
VCANP13611 ZNF602P-201ENST00000405929 924 ntBASIC3.99□□□□□ -1.77
VCANP13611 GLS-204ENST00000409428 816 ntTSL 2 BASIC3.99□□□□□ -1.77
VCANP13611 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.99□□□□□ -1.77
VCANP13611 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.99□□□□□ -1.77
VCANP13611 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.99□□□□□ -1.77
VCANP13611 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.99□□□□□ -1.77
VCANP13611 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC3.99□□□□□ -1.77
VCANP13611 AC011611.1-201ENST00000552179 197 ntBASIC3.99□□□□□ -1.77
VCANP13611 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC3.99□□□□□ -1.77
VCANP13611 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.99□□□□□ -1.77
VCANP13611 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms