Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNU6ATAC24P-201ENST00000516811 135 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA3P55318 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 OR5BC1P-201ENST00000529327 739 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC009101.1-201ENST00000568135 242 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA3P55318 MIR4644-201ENST00000579929 84 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC104662.1-201ENST00000604448 511 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 AL713922.2-201ENST00000619384 716 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 AC010809.3-201ENST00000621310 641 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 AC021106.3-201ENST00000623925 531 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
FOXA3P55318 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 AC092162.3-201ENST00000624511 1624 ntBASIC3.14□□□□□ -1.91
FOXA3P55318 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.14□□□□□ -1.91
FOXA3P55318 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA3P55318 AP001486.2-201ENST00000561652 5113 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
FOXA3P55318 RNA5SP175-201ENST00000364275 119 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
FOXA3P55318 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
FOXA3P55318 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA3P55318 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 IFNNP1-201ENST00000429219 553 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AC002069.1-201ENST00000429649 1159 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 RBMY2QP-201ENST00000429799 1147 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AL365396.1-201ENST00000430854 671 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 CEACAMP1-201ENST00000434624 1035 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AC092013.1-201ENST00000438795 332 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 HMGB3P21-201ENST00000452483 547 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 RPL23AP81-201ENST00000455252 467 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AC063943.1-201ENST00000465434 453 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 STRADBP1-201ENST00000478954 1281 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 RN7SL271P-201ENST00000487601 295 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 AC110775.1-201ENST00000513721 462 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 OR5M2P-201ENST00000529003 936 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.13□□□□□ -1.91
FOXA3P55318 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXA3P55318 HAUS8P1-201ENST00000549005 542 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA3P55318 AGGF1P8-201ENST00000562979 1000 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.13□□□□□ -1.91
FOXA3P55318 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXA3P55318 AC007546.1-201ENST00000619452 559 ntBASIC3.13□□□□□ -1.91
FOXA3P55318 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA3P55318 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA3P55318 EXOC5P1-201ENST00000510543 1969 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 NCAPGP1-201ENST00000505112 1814 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA3P55318 IPO8P1-201ENST00000455509 3109 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.12□□□□□ -1.91
FOXA3P55318 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA3P55318 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
FOXA3P55318 HMGN2P8-201ENST00000391458 268 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AL391361.1-201ENST00000405580 489 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 VN1R31P-201ENST00000417498 730 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AL139095.3-201ENST00000419672 1203 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.12□□□□□ -1.91
FOXA3P55318 OR6K4P-201ENST00000423179 955 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 RPL12P28-201ENST00000430852 489 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA3P55318 NDUFA5P1-201ENST00000433858 341 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA3P55318 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms