Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim3Q9R1R2 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trim3Q9R1R2 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim3Q9R1R2 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Gm10231-201ENSMUST00000181584 441 ntBASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Gm10175-202ENSMUST00000208752 441 ntBASIC15.65■□□□□ 0.1
Trim3Q9R1R2 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Tfap2a-209ENSMUST00000225180 1828 ntBASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim3Q9R1R2 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.64■□□□□ 0.1
Trim3Q9R1R2 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Gm7791-201ENSMUST00000219066 539 ntBASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Gm26917-202ENSMUST00000192833 3329 ntBASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Trim3Q9R1R2 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Gm9731-201ENSMUST00000209480 747 ntBASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Gm16401-202ENSMUST00000197463 2074 ntBASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim3Q9R1R2 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Il3ra-202ENSMUST00000223589 738 ntBASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Trim3Q9R1R2 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim3Q9R1R2 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms