Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Trim60Q8VI40 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim60Q8VI40 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.2■□□□□ 0.34
Trim60Q8VI40 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.2■□□□□ 0.34
Trim60Q8VI40 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trim60Q8VI40 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.19■□□□□ 0.34
Trim60Q8VI40 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim60Q8VI40 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.18■□□□□ 0.34
Trim60Q8VI40 AC175538.1-201ENSMUST00000225343 1269 ntBASIC17.18■□□□□ 0.34
Trim60Q8VI40 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim60Q8VI40 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Timm23-208ENSMUST00000226683 750 ntBASIC17.17■□□□□ 0.34
Trim60Q8VI40 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim60Q8VI40 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms