Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 AC069562.2-201ENSMUST00000224644 2146 ntBASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Gm8520-201ENSMUST00000186517 868 ntBASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Lsm1Q8VC85 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Lsm1Q8VC85 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Gm21814-202ENSMUST00000203277 873 ntBASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Lsm1Q8VC85 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Lsm1Q8VC85 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms