Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Gm7461-201ENSMUST00000058918 827 ntBASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ushbp1Q8R370 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ushbp1Q8R370 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Gm21559-201ENSMUST00000220638 855 ntBASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Gm8587-201ENSMUST00000076538 843 ntBASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ushbp1Q8R370 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Gm27389-201ENSMUST00000183622 195 ntBASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ushbp1Q8R370 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Gm13474-201ENSMUST00000122466 815 ntBASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.59■□□□□ 0.57
Ushbp1Q8R370 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ushbp1Q8R370 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ushbp1Q8R370 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ushbp1Q8R370 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.58■□□□□ 0.57
Ushbp1Q8R370 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Ushbp1Q8R370 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms