Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC18.81■□□□□ 0.6
Syne4Q8CII8 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.81■□□□□ 0.6
Syne4Q8CII8 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Syne4Q8CII8 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Gm2756-201ENSMUST00000195851 400 ntBASIC18.8■□□□□ 0.6
Syne4Q8CII8 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Syne4Q8CII8 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Gm37584-201ENSMUST00000193595 1290 ntBASIC18.79■□□□□ 0.6
Syne4Q8CII8 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Syne4Q8CII8 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Gm14494-201ENSMUST00000118786 435 ntBASIC18.78■□□□□ 0.6
Syne4Q8CII8 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Syne4Q8CII8 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Gm23935-201ENSMUST00000102303 57 ntBASIC18.77■□□□□ 0.6
Syne4Q8CII8 Gm24270-201ENSMUST00000102326 57 ntBASIC18.77■□□□□ 0.6
Syne4Q8CII8 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Gm24245-201ENSMUST00000157318 57 ntBASIC18.77■□□□□ 0.6
Syne4Q8CII8 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC18.77■□□□□ 0.6
Syne4Q8CII8 AV026068-213ENSMUST00000223675 1171 ntBASIC18.77■□□□□ 0.6
Syne4Q8CII8 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Syne4Q8CII8 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms