Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp49Q6P9L4 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Usp49Q6P9L4 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp49Q6P9L4 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Gm44450-201ENSMUST00000199528 114 ntBASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp49Q6P9L4 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp49Q6P9L4 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Mir5130-201ENSMUST00000175160 84 ntBASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
Usp49Q6P9L4 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Gm13474-201ENSMUST00000122466 815 ntBASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp49Q6P9L4 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms