Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col11a1Q61245 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col11a1Q61245 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col11a1Q61245 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC18.58■□□□□ 0.56
Col11a1Q61245 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col11a1Q61245 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col11a1Q61245 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col11a1Q61245 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
Col11a1Q61245 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.57■□□□□ 0.56
Col11a1Q61245 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Col11a1Q61245 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.57■□□□□ 0.56
Col11a1Q61245 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC18.57■□□□□ 0.56
Col11a1Q61245 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Col11a1Q61245 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Col11a1Q61245 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col11a1Q61245 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Col11a1Q61245 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Gm14057-201ENSMUST00000120631 482 ntBASIC18.56■□□□□ 0.56
Col11a1Q61245 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC18.56■□□□□ 0.56
Col11a1Q61245 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Gm2308-201ENSMUST00000166539 1004 ntBASIC18.56■□□□□ 0.56
Col11a1Q61245 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.56■□□□□ 0.56
Col11a1Q61245 Wdyhv1-206ENSMUST00000227142 786 ntBASIC18.56■□□□□ 0.56
Col11a1Q61245 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC18.56■□□□□ 0.56
Col11a1Q61245 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC18.56■□□□□ 0.56
Col11a1Q61245 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col11a1Q61245 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Col11a1Q61245 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col11a1Q61245 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC18.55■□□□□ 0.56
Col11a1Q61245 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 AC154572.2-201ENSMUST00000225105 997 ntBASIC18.55■□□□□ 0.56
Col11a1Q61245 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col11a1Q61245 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col11a1Q61245 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Col11a1Q61245 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC18.54■□□□□ 0.56
Col11a1Q61245 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Col11a1Q61245 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col11a1Q61245 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col11a1Q61245 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col11a1Q61245 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col11a1Q61245 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Col11a1Q61245 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col11a1Q61245 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col11a1Q61245 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC18.53■□□□□ 0.56
Col11a1Q61245 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Gm36967-201ENSMUST00000193814 266 ntBASIC18.53■□□□□ 0.56
Col11a1Q61245 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
Col11a1Q61245 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col11a1Q61245 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Col11a1Q61245 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col11a1Q61245 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col11a1Q61245 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col11a1Q61245 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col11a1Q61245 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col11a1Q61245 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
Col11a1Q61245 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC18.52■□□□□ 0.56
Col11a1Q61245 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col11a1Q61245 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms