Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.89■□□□□ 0.61
Usp28Q5I043 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Usp28Q5I043 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Usp28Q5I043 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Usp28Q5I043 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usp28Q5I043 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC18.88■□□□□ 0.61
Usp28Q5I043 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Usp28Q5I043 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Usp28Q5I043 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.88■□□□□ 0.61
Usp28Q5I043 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.88■□□□□ 0.61
Usp28Q5I043 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Usp28Q5I043 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Usp28Q5I043 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Usp28Q5I043 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.87■□□□□ 0.61
Usp28Q5I043 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Usp28Q5I043 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.87■□□□□ 0.61
Usp28Q5I043 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.87■□□□□ 0.61
Usp28Q5I043 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Usp28Q5I043 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Usp28Q5I043 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usp28Q5I043 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Usp28Q5I043 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Usp28Q5I043 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
Usp28Q5I043 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Usp28Q5I043 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Usp28Q5I043 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.86■□□□□ 0.61
Usp28Q5I043 Gm13186-201ENSMUST00000118031 316 ntBASIC18.86■□□□□ 0.61
Usp28Q5I043 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.86■□□□□ 0.61
Usp28Q5I043 Gm27011-201ENSMUST00000182352 972 ntBASIC18.86■□□□□ 0.61
Usp28Q5I043 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usp28Q5I043 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.86■□□□□ 0.61
Usp28Q5I043 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.85■□□□□ 0.61
Usp28Q5I043 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Usp28Q5I043 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Usp28Q5I043 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Usp28Q5I043 Phf7-203ENSMUST00000226565 1971 ntBASIC18.85■□□□□ 0.61
Usp28Q5I043 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Usp28Q5I043 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.85■□□□□ 0.61
Usp28Q5I043 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.85■□□□□ 0.61
Usp28Q5I043 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Usp28Q5I043 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms