Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Rnf40Q3U319 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rnf40Q3U319 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.29■□□□□ 0.36
Rnf40Q3U319 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Gm12821-201ENSMUST00000120022 600 ntBASIC17.28■□□□□ 0.36
Rnf40Q3U319 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rnf40Q3U319 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rnf40Q3U319 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rnf40Q3U319 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rnf40Q3U319 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rnf40Q3U319 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rnf40Q3U319 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.27■□□□□ 0.35
Rnf40Q3U319 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Mir2861-201ENSMUST00000175539 82 ntBASIC17.26■□□□□ 0.35
Rnf40Q3U319 Trmt13-210ENSMUST00000198454 880 ntBASIC17.26■□□□□ 0.35
Rnf40Q3U319 Gm43371-201ENSMUST00000202838 1031 ntBASIC17.26■□□□□ 0.35
Rnf40Q3U319 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rnf40Q3U319 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.26■□□□□ 0.35
Rnf40Q3U319 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms