Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Mir6349-201ENSMUST00000184059 97 ntBASIC16.18■□□□□ 0.18
Col28a1Q2UY11 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Gm11927-201ENSMUST00000118472 759 ntBASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
Col28a1Q2UY11 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Gm9987-201ENSMUST00000069768 567 ntBASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
Col28a1Q2UY11 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.15■□□□□ 0.18
Col28a1Q2UY11 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Col28a1Q2UY11 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.14■□□□□ 0.17
Col28a1Q2UY11 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms