Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm12260-201ENSMUST00000122447 411 ntBASIC14.17□□□□□ -0.14
Col8a1Q00780 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 AC153794.1-201ENSMUST00000169148 126 ntBASIC14.17□□□□□ -0.14
Col8a1Q00780 Gm42670-201ENSMUST00000201816 1292 ntBASIC14.17□□□□□ -0.14
Col8a1Q00780 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Col8a1Q00780 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Col8a1Q00780 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Col8a1Q00780 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col8a1Q00780 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
Col8a1Q00780 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Col8a1Q00780 Gm4995-201ENSMUST00000117247 432 ntBASIC14.16□□□□□ -0.14
Col8a1Q00780 Gm14822-201ENSMUST00000122247 291 ntBASIC14.16□□□□□ -0.14
Col8a1Q00780 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.16□□□□□ -0.14
Col8a1Q00780 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.16□□□□□ -0.14
Col8a1Q00780 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col8a1Q00780 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col8a1Q00780 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Col8a1Q00780 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Col8a1Q00780 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col8a1Q00780 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Col8a1Q00780 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col8a1Q00780 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.14□□□□□ -0.15
Col8a1Q00780 Mir5126-201ENSMUST00000175513 77 ntBASIC14.14□□□□□ -0.15
Col8a1Q00780 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.14□□□□□ -0.15
Col8a1Q00780 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col8a1Q00780 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.14□□□□□ -0.15
Col8a1Q00780 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC14.13□□□□□ -0.15
Col8a1Q00780 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col8a1Q00780 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms