Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Hmgb1P63158 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.28■□□□□ 0.52
Hmgb1P63158 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.28■□□□□ 0.52
Hmgb1P63158 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.28■□□□□ 0.52
Hmgb1P63158 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Hmgb1P63158 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.27■□□□□ 0.52
Hmgb1P63158 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.27■□□□□ 0.52
Hmgb1P63158 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Hmgb1P63158 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.27■□□□□ 0.52
Hmgb1P63158 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Hmgb1P63158 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Hmgb1P63158 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Hmgb1P63158 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Hmgb1P63158 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Hmgb1P63158 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Hmgb1P63158 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.27■□□□□ 0.51
Hmgb1P63158 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Gm27463-201ENSMUST00000183569 57 ntBASIC18.26■□□□□ 0.51
Hmgb1P63158 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.26■□□□□ 0.51
Hmgb1P63158 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.26■□□□□ 0.51
Hmgb1P63158 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.26■□□□□ 0.51
Hmgb1P63158 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Hmgb1P63158 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Hmgb1P63158 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.25■□□□□ 0.51
Hmgb1P63158 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Hmgb1P63158 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Gm22240-201ENSMUST00000175225 82 ntBASIC18.24■□□□□ 0.51
Hmgb1P63158 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.24■□□□□ 0.51
Hmgb1P63158 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.24■□□□□ 0.51
Hmgb1P63158 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms