Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Cdx2P43241 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx2P43241 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx2P43241 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx2P43241 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx2P43241 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx2P43241 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
Cdx2P43241 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx2P43241 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC15.77■□□□□ 0.12
Cdx2P43241 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx2P43241 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC15.77■□□□□ 0.12
Cdx2P43241 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Cdx2P43241 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx2P43241 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC15.76■□□□□ 0.11
Cdx2P43241 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Cdx2P43241 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Cdx2P43241 Gm2213-201ENSMUST00000197485 688 ntBASIC15.76■□□□□ 0.11
Cdx2P43241 Gm7506-201ENSMUST00000207758 815 ntBASIC15.76■□□□□ 0.11
Cdx2P43241 AC127349.1-201ENSMUST00000224590 266 ntBASIC15.76■□□□□ 0.11
Cdx2P43241 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
Cdx2P43241 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Cdx2P43241 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 AC154527.4-201ENSMUST00000224364 1667 ntBASIC15.76■□□□□ 0.11
Cdx2P43241 Gm5953-201ENSMUST00000220644 2616 ntBASIC15.76■□□□□ 0.11
Cdx2P43241 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx2P43241 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Cdx2P43241 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC15.75■□□□□ 0.11
Cdx2P43241 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.75■□□□□ 0.11
Cdx2P43241 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Cdx2P43241 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Cdx2P43241 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC15.75■□□□□ 0.11
Cdx2P43241 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx2P43241 Gm16499-203ENSMUST00000204633 2177 ntBASIC15.75■□□□□ 0.11
Cdx2P43241 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.75■□□□□ 0.11
Cdx2P43241 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Gm11779-201ENSMUST00000118541 368 ntBASIC15.74■□□□□ 0.11
Cdx2P43241 Gm13418-201ENSMUST00000119097 944 ntBASIC15.74■□□□□ 0.11
Cdx2P43241 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Gm5264-201ENSMUST00000190584 848 ntBASIC15.74■□□□□ 0.11
Cdx2P43241 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC15.74■□□□□ 0.11
Cdx2P43241 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 AC159093.1-201ENSMUST00000227779 380 ntBASIC15.74■□□□□ 0.11
Cdx2P43241 AC114585.2-202ENSMUST00000228094 426 ntBASIC15.74■□□□□ 0.11
Cdx2P43241 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
Cdx2P43241 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx2P43241 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Cdx2P43241 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms