Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Gm6190-201ENSMUST00000220683 1374 ntBASIC12.94□□□□□ -0.34
Hoxd3P09027 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hoxd3P09027 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
Hoxd3P09027 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC12.93□□□□□ -0.34
Hoxd3P09027 Gm11336-201ENSMUST00000118168 334 ntBASIC12.93□□□□□ -0.34
Hoxd3P09027 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 CT009738.1-201ENSMUST00000219031 809 ntBASIC12.93□□□□□ -0.34
Hoxd3P09027 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC12.93□□□□□ -0.34
Hoxd3P09027 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC12.93□□□□□ -0.34
Hoxd3P09027 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Hoxd3P09027 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC12.93□□□□□ -0.34
Hoxd3P09027 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Hoxd3P09027 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hoxd3P09027 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC12.92□□□□□ -0.34
Hoxd3P09027 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Hoxd3P09027 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC12.92□□□□□ -0.34
Hoxd3P09027 AC130713.1-201ENSMUST00000228853 1096 ntBASIC12.92□□□□□ -0.34
Hoxd3P09027 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Hoxd3P09027 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Gm15635-204ENSMUST00000208024 2539 ntBASIC12.92□□□□□ -0.34
Hoxd3P09027 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Hoxd3P09027 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Phf7-203ENSMUST00000226565 1971 ntBASIC12.91□□□□□ -0.34
Hoxd3P09027 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Gm6598-201ENSMUST00000202719 2615 ntBASIC12.91□□□□□ -0.34
Hoxd3P09027 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
Hoxd3P09027 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Hoxd3P09027 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Hoxd3P09027 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Hoxd3P09027 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Hoxd3P09027 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Tfap2a-209ENSMUST00000225180 1828 ntBASIC12.9□□□□□ -0.34
Hoxd3P09027 Wnt10b-204ENSMUST00000226655 1807 ntBASIC12.9□□□□□ -0.34
Hoxd3P09027 Gm5898-201ENSMUST00000121016 2071 ntBASIC12.9□□□□□ -0.34
Hoxd3P09027 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Hoxd3P09027 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hoxd3P09027 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms