Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC13.85□□□□□ -0.19
Hmgb3O54879 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC13.85□□□□□ -0.19
Hmgb3O54879 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hmgb3O54879 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Gm43272-201ENSMUST00000200599 1584 ntBASIC13.84□□□□□ -0.19
Hmgb3O54879 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Gm8839-201ENSMUST00000121279 1645 ntBASIC13.84□□□□□ -0.19
Hmgb3O54879 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Gm11620-201ENSMUST00000118770 1845 ntBASIC13.84□□□□□ -0.19
Hmgb3O54879 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
Hmgb3O54879 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hmgb3O54879 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
Hmgb3O54879 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Hmgb3O54879 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
Hmgb3O54879 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
Hmgb3O54879 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Hmgb3O54879 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
Hmgb3O54879 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Gm42778-201ENSMUST00000199644 553 ntBASIC13.83□□□□□ -0.2
Hmgb3O54879 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC13.83□□□□□ -0.2
Hmgb3O54879 AC069562.2-201ENSMUST00000224644 2146 ntBASIC13.83□□□□□ -0.2
Hmgb3O54879 Ap3s1-204ENSMUST00000225520 957 ntBASIC13.83□□□□□ -0.2
Hmgb3O54879 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Hmgb3O54879 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.83□□□□□ -0.2
Hmgb3O54879 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
Hmgb3O54879 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC13.83□□□□□ -0.2
Hmgb3O54879 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Hmgb3O54879 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC13.83□□□□□ -0.2
Hmgb3O54879 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Hmgb3O54879 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Hmgb3O54879 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hmgb3O54879 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Hmgb3O54879 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms