Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Gm37500-201ENSMUST00000192059 1443 ntBASIC13.48□□□□□ -0.25
Chd6A3KFM7 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Gm18827-201ENSMUST00000188341 790 ntBASIC13.48□□□□□ -0.25
Chd6A3KFM7 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.48□□□□□ -0.25
Chd6A3KFM7 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC13.48□□□□□ -0.25
Chd6A3KFM7 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.47□□□□□ -0.25
Chd6A3KFM7 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Chd6A3KFM7 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC13.46□□□□□ -0.25
Chd6A3KFM7 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC13.46□□□□□ -0.25
Chd6A3KFM7 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Chd6A3KFM7 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
Chd6A3KFM7 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Chd6A3KFM7 Gm12497-201ENSMUST00000138778 237 ntBASIC13.46□□□□□ -0.26
Chd6A3KFM7 Mir6990-201ENSMUST00000183724 91 ntBASIC13.46□□□□□ -0.26
Chd6A3KFM7 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Chd6A3KFM7 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Chd6A3KFM7 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.45□□□□□ -0.26
Chd6A3KFM7 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Mir1938-201ENSMUST00000158746 100 ntBASIC13.45□□□□□ -0.26
Chd6A3KFM7 Mir7085-201ENSMUST00000184353 66 ntBASIC13.45□□□□□ -0.26
Chd6A3KFM7 Gm31326-201ENSMUST00000191856 1048 ntBASIC13.45□□□□□ -0.26
Chd6A3KFM7 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Grk6-207ENSMUST00000225925 2769 ntBASIC13.45□□□□□ -0.26
Chd6A3KFM7 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.45□□□□□ -0.26
Chd6A3KFM7 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Gm5837-201ENSMUST00000191844 1369 ntBASIC13.45□□□□□ -0.26
Chd6A3KFM7 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC13.45□□□□□ -0.26
Chd6A3KFM7 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Mir449b-201ENSMUST00000104833 80 ntBASIC13.44□□□□□ -0.26
Chd6A3KFM7 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 AC127302.2-201ENSMUST00000215212 268 ntBASIC13.44□□□□□ -0.26
Chd6A3KFM7 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Chd6A3KFM7 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms