Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ARL2BPP4-201ENST00000506854 471 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 ARL2BPP6-201ENST00000512757 439 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 RNA5SP230-201ENST00000517039 122 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 OR5AK3P-201ENST00000527486 1297 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 DEFB108A-201ENST00000530110 222 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 NTS-203ENST00000551529 801 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC007954.1-201ENST00000554198 494 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL442663.2-201ENST00000554385 511 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 HMGN2P47-201ENST00000559378 272 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AADACP1-206ENST00000561502 1193 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL359715.3-201ENST00000569267 2123 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL513327.3-201ENST00000602618 469 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC010680.3-201ENST00000604215 520 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC244100.4-201ENST00000617747 388 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL445670.1-201ENST00000618889 801 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AP001052.1-201ENST00000626421 99 ntBASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC39Q9UFE4 AL132640.2-201ENST00000559968 1698 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC008627.1-201ENST00000517511 1704 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 RN7SKP171-201ENST00000364417 303 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 ST13P16-201ENST00000401760 781 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 OR4K6P-201ENST00000416478 897 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AL139413.1-201ENST00000421309 217 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 NPM1P22-201ENST00000427761 952 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AL606490.7-201ENST00000433136 191 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 RPS10P18-201ENST00000442662 495 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC007677.1-201ENST00000445757 515 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 RPL7P32-201ENST00000457119 744 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC012123.2-201ENST00000485809 248 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 OR11I1P-201ENST00000486033 954 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 NDUFA5P12-201ENST00000503796 343 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC104090.1-201ENST00000506341 1171 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 Y_RNA.701-201ENST00000516812 110 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC009852.2-201ENST00000567898 485 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 TXNP4-201ENST00000575018 310 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AP005119.2-201ENST00000579735 1105 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC010487.1-201ENST00000594408 1172 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC022432.1-201ENST00000595739 310 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC027243.2-201ENST00000602530 724 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 OR51C1P-201ENST00000608504 942 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC241377.1-201ENST00000619797 406 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 USP12-203ENST00000620323 349 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 AC092376.2-201ENST00000622621 4116 ntBASIC6.68□□□□□ -1.34
CCDC39Q9UFE4 MTCO1P18-201ENST00000455518 1419 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 PHACTR2P1-201ENST00000605639 1414 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AL442128.2-201ENST00000620246 1824 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 ZNF849P-201ENST00000594711 1566 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 SNORA63-201ENST00000363450 132 ntBASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms