Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 RNU1-130P-201ENST00000363930 160 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 RNA5SP146-201ENST00000410743 123 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 RPL7AP25-201ENST00000423357 805 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 MORF4L1P7-201ENST00000426038 703 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 RPL23AP25-201ENST00000430973 463 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 MTND2P21-201ENST00000436242 1042 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 ELOCP3-201ENST00000439303 348 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AL513533.1-201ENST00000453728 415 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC012158.1-204ENST00000483430 465 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC067904.2-201ENST00000517322 1283 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC008694.2-201ENST00000517591 306 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AP000827.1-201ENST00000527814 258 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC093510.2-201ENST00000562820 896 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 MIR4270-201ENST00000581799 70 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC005034.4-201ENST00000603612 899 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 Z98200.1-201ENST00000607298 470 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AL355816.2-201ENST00000610049 647 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 MIR6780A-201ENST00000615089 68 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 AC068870.3-201ENST00000625077 2536 ntBASIC4.79□□□□□ -1.64
SIX2Q9NPC8 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SIX2Q9NPC8 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AL592182.3-201ENST00000642132 3304 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 MTHFD2P5-201ENST00000320415 844 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AL035405.1-201ENST00000400795 710 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 VN1R8P-201ENST00000407739 893 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 PDSS1P1-201ENST00000422953 1114 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AL606490.7-201ENST00000433136 191 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 FCF1P6-201ENST00000456841 595 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC079804.1-201ENST00000461922 436 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 RPS27AP17-201ENST00000463344 455 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC018635.1-201ENST00000468292 1030 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 RN7SL354P-201ENST00000469282 294 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 SNORA76.2-201ENST00000517095 137 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC103833.1-201ENST00000517442 172 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC124068.1-201ENST00000563131 678 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC104072.1-201ENST00000568817 668 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 RN7SL52P-201ENST00000584271 284 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC008782.1-201ENST00000603386 430 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 AC115286.1-201ENST00000604298 434 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 MIR7154-201ENST00000620673 73 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 LINC01808-202ENST00000641680 1116 ntBASIC4.78□□□□□ -1.64
SIX2Q9NPC8 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SIX2Q9NPC8 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SIX2Q9NPC8 HSPA8P19-201ENST00000505359 1517 ntBASIC4.77□□□□□ -1.65
SIX2Q9NPC8 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.77□□□□□ -1.65
SIX2Q9NPC8 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SIX2Q9NPC8 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.77□□□□□ -1.65
SIX2Q9NPC8 AC067945.1-201ENST00000342609 618 ntBASIC4.77□□□□□ -1.65
SIX2Q9NPC8 RNU6-925P-201ENST00000384629 104 ntBASIC4.77□□□□□ -1.65
SIX2Q9NPC8 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms