Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 BMS1P13-201ENST00000417301 885 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC008173.1-201ENST00000418901 264 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 TRBV26OR9-2-201ENST00000432077 293 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC011242.1-201ENST00000433596 1158 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AP000936.3-201ENST00000438127 255 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 HMGB1P4-201ENST00000455362 567 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC079841.1-201ENST00000481228 950 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC004815.1-201ENST00000484185 331 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 GTF2F2P1-201ENST00000511083 675 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AL671862.1-201ENST00000515851 349 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 RNA5SP249-201ENST00000516127 99 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC010476.1-201ENST00000519111 851 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 OR8X1P-201ENST00000534542 869 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 MIR4443-201ENST00000585052 53 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 RN7SL622P-201ENST00000585292 275 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC008507.2-201ENST00000588402 1176 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC245884.10-201ENST00000597355 337 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC011492.1-201ENST00000600023 315 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AL391001.1-201ENST00000602747 715 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC023762.1-201ENST00000603280 584 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC112503.1-201ENST00000608436 391 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC126915.2-201ENST00000610957 190 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC010435.1-201ENST00000623353 1177 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 AC139713.2-215ENST00000641428 5037 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 RBPJP2-201ENST00000618187 1444 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC017007.4-201ENST00000503353 1352 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AP000568.1-201ENST00000282964 442 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 RNA5SP507-201ENST00000363603 121 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 MIR320B1-201ENST00000390209 79 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 RN7SKP114-201ENST00000410327 279 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 DPPA2P3-201ENST00000411853 655 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 LINC01347-201ENST00000417964 355 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 SEC63P1-201ENST00000425785 1258 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC245047.2-201ENST00000441060 530 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AL589765.3-201ENST00000446084 462 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC004980.3-201ENST00000447046 365 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 TCEA1P1-201ENST00000449716 880 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 RPS17P2-201ENST00000461663 408 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC092905.1-201ENST00000467527 949 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC104982.1-201ENST00000478775 574 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 RPS21P4-201ENST00000487122 248 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 HMGB1P38-201ENST00000490557 577 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC008953.1-201ENST00000497334 318 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC069306.1-201ENST00000507006 843 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC138701.1-201ENST00000524329 714 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AP002373.2-201ENST00000541631 1060 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms