Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC010132.2-201ENST00000295493 1043 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 MIR448-201ENST00000362131 111 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 RN7SKP149-201ENST00000363008 344 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 RNU6-1251P-201ENST00000364502 107 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 METTL5-204ENST00000409340 472 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 TMBIM7P-201ENST00000418074 855 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 RPS26P13-201ENST00000419030 330 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC007394.1-201ENST00000421941 531 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 RPS17P8-201ENST00000434525 335 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 PA2G4P6-201ENST00000438325 1197 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 RPL12P3-201ENST00000440080 396 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AL157884.3-201ENST00000448273 1184 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC010733.1-201ENST00000451515 401 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AURKAPS2-201ENST00000454983 333 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 EDDM3DP-201ENST00000554692 434 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC022726.1-201ENST00000587475 207 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC009704.2-201ENST00000618739 483 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AL445528.2-201ENST00000620582 470 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.23□□□□□ -1.73
SKA3Q8IX90 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 AC107068.1-201ENST00000563286 4218 ntBASIC4.23□□□□□ -1.73
SKA3Q8IX90 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SKA3Q8IX90 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 RNU1-108P-201ENST00000362556 161 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 RNA5SP105-201ENST00000391123 113 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 U3.30-201ENST00000391308 210 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC114755.2-201ENST00000413520 361 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 CEACAMP8-201ENST00000413902 580 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 EIF4HP2-201ENST00000424380 563 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AL590762.4-201ENST00000425885 253 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC007559.1-201ENST00000428736 355 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 RSL24D1P8-201ENST00000434442 492 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 HIGD1AP8-201ENST00000453927 274 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC133473.1-201ENST00000455173 299 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC104629.2-201ENST00000468627 598 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 RN7SL826P-201ENST00000479724 288 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 PPM1AP1-201ENST00000502740 1135 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 PCNAP1-201ENST00000505363 709 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC133555.2-201ENST00000550213 292 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC074029.2-201ENST00000551045 634 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC087477.6-201ENST00000559595 843 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC092868.3-201ENST00000560515 784 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC009117.1-201ENST00000563948 554 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 BGLT3-201ENST00000564523 994 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC093249.4-201ENST00000564755 259 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 MTND2P13-201ENST00000577438 1039 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 SNORD39.2-201ENST00000579995 76 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 MIR4436B2-201ENST00000581415 91 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 MIR4436B1-201ENST00000583272 91 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC015813.4-201ENST00000610469 179 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms