Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Mir5130-201ENSMUST00000175160 84 ntBASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Gm18959-201ENSMUST00000208954 655 ntBASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.5■□□□□ 0.39
Ddx56Q9D0R4 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Gm45058-201ENSMUST00000205810 766 ntBASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Gm18115-201ENSMUST00000221209 621 ntBASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ddx56Q9D0R4 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Gm10566-201ENSMUST00000086739 996 ntBASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ddx56Q9D0R4 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Mir1668-201ENSMUST00000184114 107 ntBASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms