Protein–RNA interactions for Protein: Q80TF3

Pcdh19, Protocadherin-19, mousemouse

Predictions only

Length 1,145 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh19Q80TF3 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.38■□□□□ 0.21
Pcdh19Q80TF3 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh19Q80TF3 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Gm27742-201ENSMUST00000184667 60 ntBASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Wnt10b-204ENSMUST00000226655 1807 ntBASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Pcdh19Q80TF3 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Gm18669-201ENSMUST00000216049 778 ntBASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Pcdh19Q80TF3 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Mir3081-201ENSMUST00000175305 84 ntBASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Pcdh19Q80TF3 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Gm29707-201ENSMUST00000196325 491 ntBASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Pcdh19Q80TF3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
Pcdh19Q80TF3 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Pcdh19Q80TF3 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Pcdh19Q80TF3 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Pcdh19Q80TF3 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.33■□□□□ 0.2
Pcdh19Q80TF3 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Pcdh19Q80TF3 Gm43702-201ENSMUST00000198772 2546 ntBASIC16.33■□□□□ 0.2
Pcdh19Q80TF3 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.33■□□□□ 0.2
Pcdh19Q80TF3 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Pcdh19Q80TF3 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms