Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ddx58Q6Q899 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Gm15442-201ENSMUST00000117905 1527 ntBASIC20.6■□□□□ 0.89
Ddx58Q6Q899 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Gm24589-201ENSMUST00000116692 94 ntBASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Gm13312-201ENSMUST00000119631 718 ntBASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Gm34391-201ENSMUST00000203706 907 ntBASIC20.6■□□□□ 0.89
Ddx58Q6Q899 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ddx58Q6Q899 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Gm15372-201ENSMUST00000120729 834 ntBASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 AC153794.1-201ENSMUST00000169148 126 ntBASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ddx58Q6Q899 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Birc2-201ENSMUST00000054878 378 ntBASIC20.58■□□□□ 0.89
Ddx58Q6Q899 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ddx58Q6Q899 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddx58Q6Q899 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ddx58Q6Q899 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddx58Q6Q899 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx58Q6Q899 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Rprl3-201ENSMUST00000157400 290 ntBASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx58Q6Q899 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms