Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Hmgb4Q6P8W9 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.46■□□□□ 0.38
Hmgb4Q6P8W9 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Hmgb4Q6P8W9 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Gm18669-201ENSMUST00000216049 778 ntBASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Hmgb4Q6P8W9 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Gm7461-201ENSMUST00000058918 827 ntBASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Hmgb4Q6P8W9 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Hmgb4Q6P8W9 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb4Q6P8W9 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms