Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CtcfQ61164 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CtcfQ61164 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.38■□□□□ 0.53
CtcfQ61164 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CtcfQ61164 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CtcfQ61164 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CtcfQ61164 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
CtcfQ61164 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CtcfQ61164 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CtcfQ61164 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CtcfQ61164 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CtcfQ61164 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CtcfQ61164 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CtcfQ61164 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
CtcfQ61164 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CtcfQ61164 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
CtcfQ61164 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.36■□□□□ 0.53
CtcfQ61164 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CtcfQ61164 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CtcfQ61164 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CtcfQ61164 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.35■□□□□ 0.53
CtcfQ61164 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
CtcfQ61164 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CtcfQ61164 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
CtcfQ61164 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.35■□□□□ 0.53
CtcfQ61164 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CtcfQ61164 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CtcfQ61164 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.34■□□□□ 0.53
CtcfQ61164 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CtcfQ61164 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.34■□□□□ 0.53
CtcfQ61164 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.34■□□□□ 0.53
CtcfQ61164 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CtcfQ61164 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CtcfQ61164 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CtcfQ61164 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.33■□□□□ 0.53
CtcfQ61164 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CtcfQ61164 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CtcfQ61164 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CtcfQ61164 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CtcfQ61164 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CtcfQ61164 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CtcfQ61164 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms