Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Syne3Q4FZC9 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Syne3Q4FZC9 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Syne3Q4FZC9 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Syne3Q4FZC9 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Syne3Q4FZC9 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Syne3Q4FZC9 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Syne3Q4FZC9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Gm6433-201ENSMUST00000118634 875 ntBASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Syne3Q4FZC9 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Syne3Q4FZC9 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Syne3Q4FZC9 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Gm18958-201ENSMUST00000174258 762 ntBASIC17.66■□□□□ 0.42
Syne3Q4FZC9 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms