Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Gm10849-201ENSMUST00000100397 618 ntBASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Gm26571-201ENSMUST00000181399 666 ntBASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim40Q3UWA4 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Gm29241-201ENSMUST00000189260 1096 ntBASIC15.69■□□□□ 0.1
Trim40Q3UWA4 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim40Q3UWA4 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Wnt10b-205ENSMUST00000226846 1204 ntBASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Trim40Q3UWA4 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim40Q3UWA4 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trim40Q3UWA4 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms