Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rnf40Q3U319 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.35■□□□□ 0.37
Rnf40Q3U319 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rnf40Q3U319 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Gm21956-201ENSMUST00000179946 522 ntBASIC17.34■□□□□ 0.37
Rnf40Q3U319 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Gm38285-201ENSMUST00000192928 922 ntBASIC17.34■□□□□ 0.37
Rnf40Q3U319 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Rnf40Q3U319 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rnf40Q3U319 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rnf40Q3U319 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rnf40Q3U319 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.33■□□□□ 0.36
Rnf40Q3U319 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.33■□□□□ 0.36
Rnf40Q3U319 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rnf40Q3U319 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rnf40Q3U319 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.33■□□□□ 0.36
Rnf40Q3U319 Gm45691-201ENSMUST00000206905 1120 ntBASIC17.33■□□□□ 0.36
Rnf40Q3U319 Appbp2os-202ENSMUST00000206972 447 ntBASIC17.33■□□□□ 0.36
Rnf40Q3U319 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rnf40Q3U319 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Rnf40Q3U319 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rnf40Q3U319 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC17.32■□□□□ 0.36
Rnf40Q3U319 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rnf40Q3U319 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Gm9988-201ENSMUST00000069786 435 ntBASIC17.31■□□□□ 0.36
Rnf40Q3U319 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rnf40Q3U319 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms