Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Gm13830-205ENSMUST00000201195 1155 ntBASIC21.11■□□□□ 0.97
Msh6P54276 Gm6376-201ENSMUST00000209407 580 ntBASIC21.11■□□□□ 0.97
Msh6P54276 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Gm5898-201ENSMUST00000121016 2071 ntBASIC21.11■□□□□ 0.97
Msh6P54276 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
Msh6P54276 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
Msh6P54276 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Msh6P54276 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC21.1■□□□□ 0.97
Msh6P54276 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Msh6P54276 Gm43294-201ENSMUST00000202850 2490 ntBASIC21.1■□□□□ 0.97
Msh6P54276 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Msh6P54276 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC21.1■□□□□ 0.97
Msh6P54276 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Gm15165-201ENSMUST00000118140 502 ntBASIC21.1■□□□□ 0.97
Msh6P54276 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh6P54276 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.1■□□□□ 0.97
Msh6P54276 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Msh6P54276 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Msh6P54276 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Gm12350-201ENSMUST00000121208 462 ntBASIC21.09■□□□□ 0.97
Msh6P54276 Gm27867-201ENSMUST00000184778 125 ntBASIC21.09■□□□□ 0.97
Msh6P54276 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
Msh6P54276 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh6P54276 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Msh6P54276 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Msh6P54276 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh6P54276 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Msh6P54276 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh6P54276 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh6P54276 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh6P54276 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Msh6P54276 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Msh6P54276 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC21.08■□□□□ 0.96
Msh6P54276 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
Msh6P54276 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Msh6P54276 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Msh6P54276 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
Msh6P54276 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Msh6P54276 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Slc35b2-202ENSMUST00000223987 1766 ntBASIC21.07■□□□□ 0.96
Msh6P54276 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Msh6P54276 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC21.07■□□□□ 0.96
Msh6P54276 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC21.07■□□□□ 0.96
Msh6P54276 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC21.07■□□□□ 0.96
Msh6P54276 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC21.07■□□□□ 0.96
Msh6P54276 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC21.07■□□□□ 0.96
Msh6P54276 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Msh6P54276 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Msh6P54276 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh6P54276 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh6P54276 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Msh6P54276 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Msh6P54276 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Msh6P54276 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh6P54276 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh6P54276 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh6P54276 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msh6P54276 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Msh6P54276 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC21.06■□□□□ 0.96
Msh6P54276 Gm10060-201ENSMUST00000212002 111 ntBASIC21.06■□□□□ 0.96
Msh6P54276 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms