Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col1a1P11087 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC19.5■□□□□ 0.71
Col1a1P11087 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Col1a1P11087 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Col1a1P11087 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC19.5■□□□□ 0.71
Col1a1P11087 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col1a1P11087 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.5■□□□□ 0.71
Col1a1P11087 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col1a1P11087 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Gm11780-201ENSMUST00000136880 516 ntBASIC19.49■□□□□ 0.71
Col1a1P11087 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC19.49■□□□□ 0.71
Col1a1P11087 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Col1a1P11087 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col1a1P11087 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Col1a1P11087 Gm6184-201ENSMUST00000120403 1261 ntBASIC19.48■□□□□ 0.71
Col1a1P11087 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC19.48■□□□□ 0.71
Col1a1P11087 Gm14822-201ENSMUST00000122247 291 ntBASIC19.48■□□□□ 0.71
Col1a1P11087 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC19.48■□□□□ 0.71
Col1a1P11087 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
Col1a1P11087 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Col1a1P11087 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Col1a1P11087 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Col1a1P11087 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
Col1a1P11087 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC19.48■□□□□ 0.71
Col1a1P11087 Gm7222-201ENSMUST00000117512 906 ntBASIC19.48■□□□□ 0.71
Col1a1P11087 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Col1a1P11087 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Col1a1P11087 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.47■□□□□ 0.71
Col1a1P11087 Gm5837-201ENSMUST00000191844 1369 ntBASIC19.47■□□□□ 0.71
Col1a1P11087 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Col1a1P11087 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col1a1P11087 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Gm27628-201ENSMUST00000184911 107 ntBASIC19.47■□□□□ 0.71
Col1a1P11087 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Gm10175-201ENSMUST00000086013 645 ntBASIC19.47■□□□□ 0.71
Col1a1P11087 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col1a1P11087 Gm45203-201ENSMUST00000206384 1831 ntBASIC19.46■□□□□ 0.71
Col1a1P11087 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.46■□□□□ 0.71
Col1a1P11087 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Col1a1P11087 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col1a1P11087 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col1a1P11087 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Col1a1P11087 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col1a1P11087 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC19.46■□□□□ 0.71
Col1a1P11087 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col1a1P11087 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Col1a1P11087 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Col1a1P11087 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
Col1a1P11087 Gm9172-201ENSMUST00000212092 954 ntBASIC19.45■□□□□ 0.7
Col1a1P11087 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col1a1P11087 Gm37500-201ENSMUST00000192059 1443 ntBASIC19.44■□□□□ 0.7
Col1a1P11087 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
Col1a1P11087 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col1a1P11087 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC19.44■□□□□ 0.7
Col1a1P11087 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.44■□□□□ 0.7
Col1a1P11087 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.44■□□□□ 0.7
Col1a1P11087 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Col1a1P11087 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms