Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn2aA0A0J9YTW6 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn2aA0A0J9YTW6 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn2aA0A0J9YTW6 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Scn2aA0A0J9YTW6 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Mir770-201ENSMUST00000103252 94 ntBASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm18115-201ENSMUST00000221209 621 ntBASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm10819-201ENSMUST00000099988 561 ntBASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm13186-201ENSMUST00000118031 316 ntBASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Scn2aA0A0J9YTW6 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn2aA0A0J9YTW6 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Scn2aA0A0J9YTW6 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Scn2aA0A0J9YTW6 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn2aA0A0J9YTW6 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
Scn2aA0A0J9YTW6 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.33■□□□□ 0.05
Scn2aA0A0J9YTW6 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Scn2aA0A0J9YTW6 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm26039-201ENSMUST00000158152 144 ntBASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm44450-201ENSMUST00000199528 114 ntBASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm7284-201ENSMUST00000131667 944 ntBASIC15.33■□□□□ 0.04
Scn2aA0A0J9YTW6 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm29518-201ENSMUST00000190858 372 ntBASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Scn2aA0A0J9YTW6 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Scn2aA0A0J9YTW6 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Scn2aA0A0J9YTW6 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms