Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav1A0A075B5Z4 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Gm11539-201ENSMUST00000119837 557 ntBASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Gm7370-201ENSMUST00000219471 767 ntBASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav1A0A075B5Z4 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Phf7-203ENSMUST00000226565 1971 ntBASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Gm18115-201ENSMUST00000221209 621 ntBASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav1A0A075B5Z4 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 AC159205.3-201ENSMUST00000224614 874 ntBASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav1A0A075B5Z4 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC15.46■□□□□ 0.06
Trav1A0A075B5Z4 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Trav1A0A075B5Z4 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trav1A0A075B5Z4 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
Trav1A0A075B5Z4 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trav1A0A075B5Z4 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav1A0A075B5Z4 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms