Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL139254.3-201ENST00000641097 674 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 RBPJP2-201ENST00000618187 1444 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 OR51C1P-202ENST00000641159 1444 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 DHX9P1-201ENST00000436565 3076 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 MFSD8-216ENST00000641147 4009 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 CYB5AP4-201ENST00000396692 399 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 NPM1P10-201ENST00000398310 865 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 RPL5P19-201ENST00000404228 893 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AMZ2P2-201ENST00000406819 1057 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 ATG4AP1-201ENST00000416893 538 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 RNF19BPX-201ENST00000426224 625 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL359265.2-201ENST00000434367 631 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC004938.1-201ENST00000438468 308 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 VN1R48P-201ENST00000448149 1036 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC108463.1-201ENST00000450258 347 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL513533.1-201ENST00000453728 415 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC067904.2-201ENST00000517322 1283 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC137768.1-201ENST00000549998 553 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC063949.1-201ENST00000552900 865 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 RN7SL652P-201ENST00000577769 300 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC005229.3-201ENST00000603438 323 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC087283.1-201ENST00000604029 1074 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC073137.1-201ENST00000605636 634 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL672167.1-204ENST00000641875 3017 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL606537.1-201ENST00000607258 2011 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 CASC19-206ENST00000641028 1430 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 AL731532.2-201ENST00000623542 1953 ntBASIC4.78□□□□□ -1.64
LHX3Q9UBR4 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
LHX3Q9UBR4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 MAPK10-263ENST00000641052 4307 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 RNU6-249P-201ENST00000363016 102 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AL034403.1-201ENST00000399414 885 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AL590139.1-201ENST00000416267 400 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AC140479.3-201ENST00000418944 1126 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AC073264.2-201ENST00000448886 166 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 HSPE1P22-201ENST00000456856 327 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 HMGB3P16-201ENST00000508037 287 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 RNU6-491P-201ENST00000516099 110 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AC074029.2-201ENST00000551045 634 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 MIR4675-201ENST00000577898 77 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 RN7SL690P-201ENST00000582087 240 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms