Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.74□□□□□ -1.65
HMGA1P17096 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HMGA1P17096 RPL21P108-201ENST00000413857 481 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.74□□□□□ -1.65
HMGA1P17096 RPS29P17-201ENST00000430795 166 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 GTF3AP5-201ENST00000442645 697 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 TDGF1P1-201ENST00000445734 527 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 SETP4-201ENST00000455717 868 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 AC010618.1-201ENST00000469924 477 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 AC020890.1-201ENST00000491837 504 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 IGBP1P5-201ENST00000507524 1000 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 RNA5SP464-201ENST00000516251 108 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.74□□□□□ -1.65
HMGA1P17096 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC4.74□□□□□ -1.65
HMGA1P17096 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HMGA1P17096 AP000619.2-201ENST00000546014 969 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.74□□□□□ -1.65
HMGA1P17096 MIR3138-201ENST00000585238 82 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 AC016717.3-201ENST00000624730 554 ntBASIC4.74□□□□□ -1.65
HMGA1P17096 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.74□□□□□ -1.65
HMGA1P17096 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HMGA1P17096 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.74□□□□□ -1.65
HMGA1P17096 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HMGA1P17096 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HMGA1P17096 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HMGA1P17096 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.73□□□□□ -1.65
HMGA1P17096 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGA1P17096 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HMGA1P17096 OR4K17-201ENST00000315543 1032 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 RAD23BP1-201ENST00000421404 1227 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGA1P17096 AL672167.3-201ENST00000465951 960 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 AC053481.1-201ENST00000467217 306 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.73□□□□□ -1.65
HMGA1P17096 RN7SL810P-201ENST00000493031 276 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGA1P17096 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.73□□□□□ -1.65
HMGA1P17096 ATP5J2P6-201ENST00000565203 266 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 AC130352.1-201ENST00000602979 661 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 AL139041.1-201ENST00000605480 610 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 AC020634.1-201ENST00000608701 549 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 LINC01808-202ENST00000641680 1116 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.73□□□□□ -1.65
HMGA1P17096 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 LINC00622-201ENST00000562811 1570 ntBASIC4.73□□□□□ -1.65
HMGA1P17096 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
HMGA1P17096 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.73□□□□□ -1.65
HMGA1P17096 AL356317.1-201ENST00000396110 1436 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.72□□□□□ -1.65
HMGA1P17096 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
HMGA1P17096 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HMGA1P17096 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGA1P17096 AL139095.3-201ENST00000419672 1203 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 RPL21P43-201ENST00000425440 472 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 RPS12P10-201ENST00000427031 377 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGA1P17096 NMNAT1P2-201ENST00000435192 860 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGA1P17096 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 PPIAP21-201ENST00000464473 501 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 RN7SL303P-201ENST00000469773 251 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 AC109327.1-201ENST00000471666 403 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 AC023424.1-201ENST00000496058 459 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGA1P17096 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGA1P17096 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.72□□□□□ -1.65
HMGA1P17096 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.72□□□□□ -1.65
HMGA1P17096 AC023575.1-201ENST00000580510 358 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 AC125494.2-201ENST00000602431 657 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 AC002069.2-201ENST00000603580 883 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 MIR6716-201ENST00000613413 80 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 AC114781.5-201ENST00000615297 108 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 MIR6891-201ENST00000618788 93 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.72□□□□□ -1.65
HMGA1P17096 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 AL355852.1-201ENST00000454081 1771 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HMGA1P17096 ZNF402P-201ENST00000404435 3100 ntBASIC4.72□□□□□ -1.65
HMGA1P17096 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
HMGA1P17096 AC008079.2-201ENST00000623543 20396 ntBASIC4.71□□□□□ -1.65
HMGA1P17096 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGA1P17096 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGA1P17096 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.71□□□□□ -1.66
HMGA1P17096 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.71□□□□□ -1.66
HMGA1P17096 OR56B2P-201ENST00000317102 954 ntBASIC4.71□□□□□ -1.66
HMGA1P17096 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
HMGA1P17096 OR6C69P-201ENST00000394268 893 ntBASIC4.71□□□□□ -1.66
HMGA1P17096 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms