Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC125611.1-201ENST00000549563 229 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 MRPS21P7-201ENST00000566937 238 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 AC021483.2-201ENST00000567415 758 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 MIR4489-201ENST00000578869 62 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 AL137072.1-201ENST00000603444 466 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 AC245100.7-201ENST00000609678 442 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 AC100847.1-201ENST00000611316 481 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 AC068620.4-201ENST00000636730 1182 ntBASIC5.66□□□□□ -1.5
DKK3Q9UBP4 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
DKK3Q9UBP4 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AL356317.1-201ENST00000396110 1436 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC083899.1-201ENST00000454465 3819 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 PWAR1-201ENST00000624188 2414 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 GAPDHP24-201ENST00000328713 983 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 MIR513B-201ENST00000385136 84 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 ATP5F1P2-201ENST00000398143 760 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 LRRC37BP1-201ENST00000398851 714 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AL391361.1-201ENST00000405580 489 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 OR3A2-201ENST00000408891 1076 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 RN7SKP97-201ENST00000410966 333 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AL445183.3-201ENST00000414168 502 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC008173.1-201ENST00000418901 264 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 MTCO3P4-201ENST00000419236 787 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 USP9YP21-201ENST00000420603 432 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 RPS27P5-201ENST00000444247 244 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 NDUFAF4P2-201ENST00000445374 520 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC004022.1-201ENST00000447766 1066 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 NAP1L1P3-201ENST00000462291 880 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AP000942.1-201ENST00000463969 747 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 NDUFA5P9-201ENST00000472609 340 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 RPL21P131-201ENST00000497298 483 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 ST13P12-201ENST00000508958 1094 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC118465.1-201ENST00000513820 1271 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 RNA5SP362-201ENST00000516048 118 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 OSBPL9P5-201ENST00000542581 171 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC060780.2-201ENST00000589047 198 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 CCDC58P3-201ENST00000590792 430 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.65□□□□□ -1.5
DKK3Q9UBP4 AC104985.3-201ENST00000623479 597 ntBASIC5.65□□□□□ -1.5
DKK3Q9UBP4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 CASC19-221ENST00000641309 1382 ntBASIC5.65□□□□□ -1.51
DKK3Q9UBP4 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 AC018809.2-201ENST00000602436 3823 ntBASIC5.65□□□□□ -1.51
DKK3Q9UBP4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
DKK3Q9UBP4 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
DKK3Q9UBP4 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms