Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Clrn1Q8K445 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clrn1Q8K445 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clrn1Q8K445 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Clrn1Q8K445 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.79■□□□□ 0.12
Clrn1Q8K445 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Clrn1Q8K445 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Gm16061-201ENSMUST00000122167 857 ntBASIC15.78■□□□□ 0.12
Clrn1Q8K445 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Gm7370-201ENSMUST00000219471 767 ntBASIC15.78■□□□□ 0.12
Clrn1Q8K445 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.78■□□□□ 0.12
Clrn1Q8K445 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Clrn1Q8K445 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Gm13474-201ENSMUST00000122466 815 ntBASIC15.77■□□□□ 0.12
Clrn1Q8K445 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.77■□□□□ 0.12
Clrn1Q8K445 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Krtap5-1-202ENSMUST00000188274 742 ntBASIC15.77■□□□□ 0.12
Clrn1Q8K445 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Clrn1Q8K445 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Clrn1Q8K445 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC15.77■□□□□ 0.11
Clrn1Q8K445 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Clrn1Q8K445 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Clrn1Q8K445 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
Clrn1Q8K445 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Clrn1Q8K445 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Clrn1Q8K445 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Gm18959-201ENSMUST00000208954 655 ntBASIC15.76■□□□□ 0.11
Clrn1Q8K445 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Gm7292-201ENSMUST00000194706 2527 ntBASIC15.76■□□□□ 0.11
Clrn1Q8K445 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Clrn1Q8K445 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Clrn1Q8K445 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Clrn1Q8K445 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Clrn1Q8K445 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Clrn1Q8K445 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Clrn1Q8K445 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Clrn1Q8K445 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Clrn1Q8K445 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Clrn1Q8K445 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms