Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC17.68■□□□□ 0.42
Ccdc28aQ8CEI3 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc28aQ8CEI3 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Gm10602-201ENSMUST00000098239 609 ntBASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc28aQ8CEI3 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Gm27275-201ENSMUST00000184318 272 ntBASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc28aQ8CEI3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ccdc28aQ8CEI3 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
Ccdc28aQ8CEI3 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Ccdc28aQ8CEI3 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Gm18666-201ENSMUST00000190039 958 ntBASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc28aQ8CEI3 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Ccdc28aQ8CEI3 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms