Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nup88Q8CEC0 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC19.73■□□□□ 0.75
Nup88Q8CEC0 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nup88Q8CEC0 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Nup88Q8CEC0 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.73■□□□□ 0.75
Nup88Q8CEC0 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Nup88Q8CEC0 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.73■□□□□ 0.75
Nup88Q8CEC0 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Nup88Q8CEC0 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Nup88Q8CEC0 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Mir5130-201ENSMUST00000175160 84 ntBASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Nup88Q8CEC0 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Nup88Q8CEC0 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Gm26917-202ENSMUST00000192833 3329 ntBASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Nup88Q8CEC0 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Nup88Q8CEC0 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.67■□□□□ 0.74
Nup88Q8CEC0 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 77.4 ms