Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Hmgb4Q6P8W9 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gm43272-201ENSMUST00000200599 1584 ntBASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gm11950-201ENSMUST00000121615 838 ntBASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Actl10-202ENSMUST00000226583 1501 ntBASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb4Q6P8W9 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Gm28033-201ENSMUST00000184224 96 ntBASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Gm17971-201ENSMUST00000190239 806 ntBASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb4Q6P8W9 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Mir770-201ENSMUST00000103252 94 ntBASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Gm37722-201ENSMUST00000193757 208 ntBASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb4Q6P8W9 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb4Q6P8W9 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.46■□□□□ 0.39
Hmgb4Q6P8W9 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms