Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC21.7■■□□□ 1.06
Trim28Q62318 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Trim28Q62318 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC21.7■■□□□ 1.06
Trim28Q62318 Gm44454-201ENSMUST00000198541 138 ntBASIC21.7■■□□□ 1.06
Trim28Q62318 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Trim28Q62318 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Trim28Q62318 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim28Q62318 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC21.69■■□□□ 1.06
Trim28Q62318 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC21.69■■□□□ 1.06
Trim28Q62318 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
Trim28Q62318 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC21.69■■□□□ 1.06
Trim28Q62318 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim28Q62318 Gm7461-201ENSMUST00000058918 827 ntBASIC21.69■■□□□ 1.06
Trim28Q62318 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Trim28Q62318 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim28Q62318 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim28Q62318 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Trim28Q62318 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim28Q62318 Gm43294-201ENSMUST00000202850 2490 ntBASIC21.68■■□□□ 1.06
Trim28Q62318 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC21.68■■□□□ 1.06
Trim28Q62318 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim28Q62318 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim28Q62318 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim28Q62318 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Trim28Q62318 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Trim28Q62318 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim28Q62318 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.68■■□□□ 1.06
Trim28Q62318 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Trim28Q62318 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC21.67■■□□□ 1.06
Trim28Q62318 Gm43347-201ENSMUST00000200226 580 ntBASIC21.67■■□□□ 1.06
Trim28Q62318 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC21.67■■□□□ 1.06
Trim28Q62318 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim28Q62318 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Trim28Q62318 Gm5898-201ENSMUST00000121016 2071 ntBASIC21.67■■□□□ 1.06
Trim28Q62318 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim28Q62318 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim28Q62318 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim28Q62318 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC21.66■■□□□ 1.06
Trim28Q62318 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim28Q62318 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Trim28Q62318 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC21.66■■□□□ 1.06
Trim28Q62318 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
Trim28Q62318 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC21.66■■□□□ 1.06
Trim28Q62318 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim28Q62318 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim28Q62318 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim28Q62318 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim28Q62318 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim28Q62318 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim28Q62318 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim28Q62318 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
Trim28Q62318 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
Trim28Q62318 Gm15165-201ENSMUST00000118140 502 ntBASIC21.65■■□□□ 1.06
Trim28Q62318 Gm27867-201ENSMUST00000184778 125 ntBASIC21.65■■□□□ 1.06
Trim28Q62318 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC21.65■■□□□ 1.06
Trim28Q62318 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC21.65■■□□□ 1.06
Trim28Q62318 AC133598.3-202ENSMUST00000224219 531 ntBASIC21.65■■□□□ 1.06
Trim28Q62318 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim28Q62318 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim28Q62318 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim28Q62318 Gm7935-201ENSMUST00000100555 1278 ntBASIC21.64■■□□□ 1.05
Trim28Q62318 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC21.64■■□□□ 1.05
Trim28Q62318 AC164629.2-201ENSMUST00000217916 270 ntBASIC21.64■■□□□ 1.05
Trim28Q62318 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC21.64■■□□□ 1.05
Trim28Q62318 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim28Q62318 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim28Q62318 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim28Q62318 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC21.64■■□□□ 1.05
Trim28Q62318 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC21.63■■□□□ 1.05
Trim28Q62318 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Gm12644-201ENSMUST00000119935 606 ntBASIC21.63■■□□□ 1.05
Trim28Q62318 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC21.63■■□□□ 1.05
Trim28Q62318 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC21.63■■□□□ 1.05
Trim28Q62318 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC21.63■■□□□ 1.05
Trim28Q62318 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim28Q62318 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms