Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Trav6-3Q5R1E6 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Trav6-3Q5R1E6 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Trav6-3Q5R1E6 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Gm5297-201ENSMUST00000198555 1171 ntBASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Timm23-208ENSMUST00000226683 750 ntBASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Trav6-3Q5R1E6 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms