Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.13■□□□□ 0.49
CiitaP79621 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CiitaP79621 Gm17807-201ENSMUST00000186869 298 ntBASIC18.13■□□□□ 0.49
CiitaP79621 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CiitaP79621 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CiitaP79621 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CiitaP79621 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
CiitaP79621 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CiitaP79621 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CiitaP79621 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.12■□□□□ 0.49
CiitaP79621 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 AC125350.1-201ENSMUST00000225115 903 ntBASIC18.12■□□□□ 0.49
CiitaP79621 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CiitaP79621 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.11■□□□□ 0.49
CiitaP79621 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CiitaP79621 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Gm28033-201ENSMUST00000184224 96 ntBASIC18.11■□□□□ 0.49
CiitaP79621 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC18.11■□□□□ 0.49
CiitaP79621 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CiitaP79621 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.1■□□□□ 0.49
CiitaP79621 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.1■□□□□ 0.49
CiitaP79621 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Gm18669-201ENSMUST00000216049 778 ntBASIC18.1■□□□□ 0.49
CiitaP79621 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CiitaP79621 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
CiitaP79621 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.1■□□□□ 0.49
CiitaP79621 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.1■□□□□ 0.49
CiitaP79621 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CiitaP79621 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.1■□□□□ 0.49
CiitaP79621 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CiitaP79621 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC18.09■□□□□ 0.49
CiitaP79621 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.09■□□□□ 0.49
CiitaP79621 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Mir3081-201ENSMUST00000175305 84 ntBASIC18.09■□□□□ 0.49
CiitaP79621 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CiitaP79621 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CiitaP79621 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CiitaP79621 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CiitaP79621 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.08■□□□□ 0.48
CiitaP79621 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CiitaP79621 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC18.08■□□□□ 0.48
CiitaP79621 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CiitaP79621 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CiitaP79621 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CiitaP79621 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CiitaP79621 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CiitaP79621 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CiitaP79621 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CiitaP79621 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CiitaP79621 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
CiitaP79621 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CiitaP79621 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms