Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Gm20472-201ENSMUST00000174403 1240 ntBASIC15.26■□□□□ 0.03
Cdh11P55288 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Cdh11P55288 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Cdh11P55288 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.26■□□□□ 0.03
Cdh11P55288 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Cdh11P55288 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdh11P55288 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Cdh11P55288 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.25■□□□□ 0.03
Cdh11P55288 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Cdh11P55288 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC15.25■□□□□ 0.03
Cdh11P55288 Gm37292-201ENSMUST00000192062 758 ntBASIC15.25■□□□□ 0.03
Cdh11P55288 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC15.25■□□□□ 0.03
Cdh11P55288 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdh11P55288 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.24■□□□□ 0.03
Cdh11P55288 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.24■□□□□ 0.03
Cdh11P55288 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC15.24■□□□□ 0.03
Cdh11P55288 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC15.24■□□□□ 0.03
Cdh11P55288 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC15.24■□□□□ 0.03
Cdh11P55288 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdh11P55288 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Cdh11P55288 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC15.23■□□□□ 0.03
Cdh11P55288 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
Cdh11P55288 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC15.23■□□□□ 0.03
Cdh11P55288 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Cdh11P55288 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC15.23■□□□□ 0.03
Cdh11P55288 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Cdh11P55288 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Gm16042-201ENSMUST00000204813 1247 ntBASIC15.23■□□□□ 0.03
Cdh11P55288 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.23■□□□□ 0.03
Cdh11P55288 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Cdh11P55288 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Gm37820-201ENSMUST00000194021 2147 ntBASIC15.23■□□□□ 0.03
Cdh11P55288 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Cdh11P55288 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Cdh11P55288 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdh11P55288 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC15.22■□□□□ 0.03
Cdh11P55288 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdh11P55288 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms