Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC21.18■□□□□ 0.98
Msh6P54276 Vti1a-206ENSMUST00000225529 1244 ntBASIC21.18■□□□□ 0.98
Msh6P54276 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh6P54276 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Msh6P54276 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Msh6P54276 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC21.17■□□□□ 0.98
Msh6P54276 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Msh6P54276 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC21.17■□□□□ 0.98
Msh6P54276 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Msh6P54276 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Gm1401-201ENSMUST00000122048 772 ntBASIC21.16■□□□□ 0.98
Msh6P54276 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 AC138767.1-201ENSMUST00000222661 415 ntBASIC21.16■□□□□ 0.98
Msh6P54276 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC21.16■□□□□ 0.98
Msh6P54276 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Msh6P54276 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Gm43338-201ENSMUST00000198617 2223 ntBASIC21.15■□□□□ 0.98
Msh6P54276 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Msh6P54276 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.15■□□□□ 0.98
Msh6P54276 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Gm42900-201ENSMUST00000197184 2167 ntBASIC21.15■□□□□ 0.98
Msh6P54276 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Msh6P54276 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Msh6P54276 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh6P54276 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC21.15■□□□□ 0.98
Msh6P54276 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Msh6P54276 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Msh6P54276 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Msh6P54276 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC21.14■□□□□ 0.98
Msh6P54276 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Msh6P54276 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC21.14■□□□□ 0.97
Msh6P54276 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Msh6P54276 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Msh6P54276 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Msh6P54276 Gm11841-201ENSMUST00000117060 1963 ntBASIC21.14■□□□□ 0.97
Msh6P54276 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
Msh6P54276 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
Msh6P54276 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC21.13■□□□□ 0.97
Msh6P54276 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 AC160338.1-201ENSMUST00000214232 705 ntBASIC21.13■□□□□ 0.97
Msh6P54276 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
Msh6P54276 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh6P54276 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Msh6P54276 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Msh6P54276 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC21.12■□□□□ 0.97
Msh6P54276 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Cmtm5-203ENSMUST00000227441 610 ntBASIC21.12■□□□□ 0.97
Msh6P54276 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC21.12■□□□□ 0.97
Msh6P54276 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Msh6P54276 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Msh6P54276 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC21.12■□□□□ 0.97
Msh6P54276 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC21.12■□□□□ 0.97
Msh6P54276 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh6P54276 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh6P54276 Mir5131-201ENSMUST00000175426 93 ntBASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms