Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Gm18959-201ENSMUST00000208954 655 ntBASIC18.22■□□□□ 0.51
Chmp6P0C0A3 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Gm18958-201ENSMUST00000174258 762 ntBASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chmp6P0C0A3 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Chmp6P0C0A3 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Chmp6P0C0A3 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
Chmp6P0C0A3 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Chmp6P0C0A3 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
Chmp6P0C0A3 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chmp6P0C0A3 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Mir5130-201ENSMUST00000175160 84 ntBASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Chmp6P0C0A3 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp6P0C0A3 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms